Software packages developed at the CMRR that you may find useful in your own MR research

Most Requested

Multi-band EPI
Spectroscopy:  SEMI-LASER (SVS) —  LASER, SEMI-LASER, PRESS, STEAM, Diffusion (SVS and CSI) —  FAST(EST)MAP

Pulse Sequences

Adiabatic T1r/T2r/RAFFn Sequences
Multi slice adiabatic T1ρ, T2ρ and RAFFn relaxation mapping
BISTRO Pulse Sequence
magnet field B1-insensitive, frequency-selective saturation pulse train with varied low RF power for use of water suppression and narrow band saturation
FAIR ASST
Perfusion imaging methods with pulsed arterial spin labeling (PASL)
FASTMAP
FASTMAP shimming on Varian INOVA systems
GM-PETRA
Pointwise Encoding Time reduction with Radial Acquisition technique with Gradient Modulation (GM-PETRA)
MB-EPI PCASL
Multi-band EPI pseudo-continuous arterial spin labeling (PCASL)
Multi-band EPI
highly-accelerated 2D EPI pulse sequences for Siemens scanners
OPTIMAL FAIR
Perfusion imaging methods with pulsed arterial spin labeling (PASL)
Single Slice MASE
single slice multiecho adiabatic spin echo (MASE) imaging sequence designed to produce accurate T2 measurements at high fields
Spectroscopy - FAST(EST)MAP
Spectroscopy FAST(EST)MAP: Automatic 1st and 2nd order shimming using 2D projections
Spectroscopy - LASER, SEMI-LASER, PRESS, STEAM, Diffusion (SVS and CSI)
Spectroscopy pulse sequences for Siemens scanners - LASER, SEMI-LASER, PRESS, STEAM, Diffusion (SVS and CSI)
Spectroscopy - SEMI-LASER (SVS)
Spectroscopy SEMI_LASER (SVS) pulse sequences for Siemens scanners
SWIFT
SWeep Imaging with Fourier Transformation

Software

ALS Multimodal Analysis
MATLAB source code for paper by Pramod Pisharady
ALS Tract-Specific Analysis
MATLAB source code for paper by Pramod Pisharady
AutoVOI
Automated volume‐of‐interest (VOI) prescription pipeline for single‐voxel MRS
Ghost/Object
Referenceless Nyquist Ghost Correction software
Graph Curvature Toolbox
Graph Curvature Toolbox software
Image Reconstruction Tools
Intelligent Medical Imaging and Image Processing Lab
MIX
MIX toolbox
MRspa: Magnetic Resonance signal processing and analysis
Matlab-based spectral processing and analysis package
NORDIC
Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
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